GitHub4d
Analysis of ATAC-Seq data from the stem of the Poplar (Populus trichocarpa) plant derived from the singleron-RD CeleScope platform using ArchR
Apple MacBook Pro or M3 laptop with 16 GB memory or equivalent decent configuration. Unix OS with conda environment for ArchR. We used the latest Rocky CentOS and prebuilt conda environment for ArchR.
Frontiers3d
Local adaptation, genetic diversity and key environmental interactions in a collection of novel red clover germplasm
Where: Alt is the alternative allele count and Ref is the reference allele count (Li, 2011). For analysis, missing data of the filtered SNPs with greater than 95% coverage was replaced by mean allele ...